PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C009188P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family MYB
Protein Properties Length: 266aa    MW: 29904.8 Da    PI: 9.7531
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C009188P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.53.7e-092166346
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                     +WT+eE +++ +a +++  +   +W ++a++++ g+t  +++  ++ 
   MELO3C009188P1 21 KWTPEENKRFENALALFDRDtpdRWVKVAAMIP-GKTVGDVVKQYRE 66
                     8*****************99*************.*******999986 PP

2Myb_DNA-binding47.15.4e-15127171347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ +++ + k++G+g+W+ I+r + ++Rt+ q+ s+ qky
   MELO3C009188P1 127 PWTEEEHRQFLMGLKKYGKGDWRNISRSFVTTRTPTQVASHAQKY 171
                      8*******************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.9311772IPR017884SANT domain
SMARTSM007172.3E-91870IPR001005SANT/Myb domain
SuperFamilySSF466898.61E-122075IPR009057Homeodomain-like
PfamPF002491.9E-72167IPR001005SANT/Myb domain
CDDcd001675.11E-82168No hitNo description
Gene3DG3DSA:1.10.10.609.2E-13118176IPR009057Homeodomain-like
PROSITE profilePS5129420.02120176IPR017930Myb domain
SuperFamilySSF466892.01E-17121175IPR009057Homeodomain-like
TIGRFAMsTIGR015572.1E-17123175IPR006447Myb domain, plants
SMARTSM007175.6E-13124174IPR001005SANT/Myb domain
CDDcd001671.67E-11127172No hitNo description
PfamPF002492.0E-12127171IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MKRGIGILSP ATYLRNSGCS KWTPEENKRF ENALALFDRD TPDRWVKVAA MIPGKTVGDV  60
VKQYRELVED VSDIEAGLVP VPGYGVGNSF VLEWSNDGGE FAPMYIGAGK RGGSVRASDQ  120
ERKKGVPWTE EEHRQFLMGL KKYGKGDWRN ISRSFVTTRT PTQVASHAQK YFIRQLTGGK  180
DKRRSSIHDI TTTHLFDNPI QPNHDKISPP SYIEVTMAPL CGISSLRPKL LQDQIFLRSN  240
NFHGCQNVSP YSPNAFQVQR EQQYQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A6e-1722841173RADIALIS
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818410.0LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011.
GenBankLN7132580.0LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008442463.10.0PREDICTED: transcription factor DIVARICATA-like
SwissprotQ8S9H73e-90DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A0A0L9Y90.0A0A0A0L9Y9_CUCSA; Uncharacterized protein
STRINGGLYMA03G14440.11e-106(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2476233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.11e-103MYB family protein